CodonO (codon usage bias measurement)

ComPhy (Genome Composite Distance Phylogeny for whole-genome phylogeney inferences)

DigitalTree (displaying biological data in tree structure)

GeneFAS (gene function prediction)

MUPRED (protein secondary structure prediction)

Musite (prediction of both general and kinase-specific protein phosphorylation sites)

P3DB (plant protein phosphorylation database)

PolyPhy (Microbial phylogeny reconstruction with polytomy identification)

PROSPECT (protein structure prediction, also available at Bioinformatics Solutions Inc.)

ProteinDecision (protein identification using Peptide-Mass Fingerprinting Data)

Rnall /RnallViewer (RNA Local secondary structure prediction)

SoyKB (Soybean Knowledge Base: Web Resource for Soybean Translational Genomics )

SoyMetDB (The soybean metabolome database)

SpotLink (proteomics tool for organization and visualization)