Tools we Developed or Co-Developed
Actively Maintained
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BHIT
SNP interaction detection
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MUFOLD
Protein tertiary structure prediction
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Musite
Prediction of both general and kinase-specific protein phosphorylation sites
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Primegens
Primer design for microarray
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P3DB
Plant protein phosphorylation database
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SoyKB
Soybean knowledge base
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IEW
Integrated Edge Weights
Others
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ComPhy
Genome Composite Distance Phylogeny for whole-genome phylogeney inferences
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CodonO
Codon usage bias measurement
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DomainParser
Protein structure domain partition
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EXCAVATOR
Gene expression data analysis
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GeneFAS
Gene function prediction
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HPbase
A comprehensive resource for Helicobactor Pylori
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Mosaic
Partition and display gene graph based on GO terms
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MUPRED
Protein secondary structure prediction
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NOA
Network ontology analysis
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PolyPhy
Microbial phylogeny reconstruction with polytomy identification
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PROSPECT
Protein structure prediction, also available at Bioinformatics Solutions Inc
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ProteinDecision
Protein identification using Peptide-Mass Fingerprinting Data
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Rnall
RNA Local secondary structure prediction
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SoyMetDB
The soybean metabolome database
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SpotLink
Proteomics tool for organization and visualization
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GRNInfer
A gene regulatory network inference tool from multiple microarray datasets